Plot spike traces for network from BGT simulation

This function plots spike traces for a network object from a Biological Growth-Transform (BGT) simulation.

Usage

plot.network.traces(
  network, 
  return_plot = FALSE, 
  I_stim      = NULL, 
  window_size = 0.01, 
  plot_rates  = TRUE
)

Arguments

network

Network object with BGT simulation traces to plot.

return_plot

Logical indicating whether to return the ggplot object (TRUE) or print it (FALSE) (default: FALSE).

I_stim

Matrix of stimulus currents, with rows representing neurons and columns representing sample times. Presumably the one used to generate the traces. Options. If provided, will be added to the bottom of the plot.

window_size

Proportion of time steps to use as a moving window for computing spike rate (default: 0.01).

plot_rates

Boolean specifying whether to include a plot of estimated mean spike rate for each cell type above the type's membrane potential plot.

Value

A ggplot object showing spike traces for all neurons in the network over time.