Tech & Tools Technologies and Tools

neurons – High performance modeling tools in C++ with R interface

Neurons is an R/C++ package for simulating neurons and networks of neurons, currently under development at Oviedo Lab. The package is built around a few core object classes, all of which are a C++ class accessible through R via Rcpp modules and wrappers.

Michael Barkasi • 4 days ago

circuit mappingsimulationSNNs

Wispack – An R package for warped sigmoidal Poisson-process mixed-effects modeling

Wispack (pronounced “wisp package” or “wisp pack”) is an R package for testing for between-group effects on spatial variation in spatial transcriptomics data. As such variation is often functional, these can be thought of as functional spatial effects (FSE).

Michael Barkasi • 15 days ago

MERFISHsoftwarespatial transcriptomics

Example of Estimated Precision (PPV) by gene barcode for a MERFISH run

Quality Control Algorithm for MERFISH Software

Quality control algorithm and software that can be used to improve MERFISH runs.

Michael Barkasi • a month ago

MERFISHQCsoftwarespatial transcriptomics