neuronsDG is an R/C++ package for simulating neurons, currently under development at Oviedo Lab. The package is built around the core object class neuron, a C++ class accessible through R via Rcpp modules and wrappers. This class is meant for modeling the spiking of single neurons with dichotomized Gaussians.
Michael Barkasi • 8 hours ago
DACx is an R/C++ package for running biologically realistic simulations of the mammalian auditory cortex – a “digital twin”. Network topologies are built from clusters of cells, called nodes, arrayed in three dimensions and connected using circuit motifs. Network activity is simulated using an expanded version of the growth-transform (GT) membrane voltage time derivative introduced by Gangopadhyay and Chakrabartty.
Michael Barkasi • a day ago
Wispack (pronounced “wisp package” or “wisp pack”) is an R package for testing for between-group effects on spatial variation in spatial transcriptomics data. As such variation is often functional, these can be thought of as functional spatial effects (FSE).
Michael Barkasi • a day ago
Quality control algorithm and software that can be used to improve MERFISH runs.
Michael Barkasi • 3 months ago